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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
My Second Year Progress Report
Published:
I wrote this for my second year progress report from work completed in the Das Lab. This also serves as a more specific outline for a project I discussed in two talks (see my CV) A novel approach toward aptamer design .
How Neural Networks Work
Published:
I wrote this as I was learning about neural networks during my first year in my PhD program. Most of the content comes directly from the classic “Neural Networks and Deep Learning” textbook by Michael Nielsen and 3Blue1Brown’s videos.
portfolio
Rotation Project 1: Rotskoff Group
Using Neural Networks for Quantum MD Simulations
Rotation Project 2: Das Lab
Evaluating DynaMight for Conformational Heterogeneity of the Tetrahymena Ribozyme
Summer Project 1: Das Lab
Evaluating heterogeneity algorithms on ROOL RNA
Summer Project 2: Das Lab
Benchmarking Novel RNA Foundation Models on EternaBench Dataset
Fall Project 1: Das Lab
Fine-tuning RibonanzaNet to Predict RNA/small-molecule interactions
Fall Project 2: Das Lab
Fine-tuning RibonanzaNet to Predict Ligand Binding Affinity
publications
Paper Title Number 1
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1).
Download Paper | Download Slides | Download Bibtex
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2).
Download Paper | Download Slides
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3).
Download Paper | Download Slides
Paper Title Number 4
Published in GitHub Journal of Bugs, 2024
This paper is about fixing template issue #693.
Recommended citation: Your Name, You. (2024). "Paper Title Number 3." GitHub Journal of Bugs. 1(3).
Download Paper
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown file that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.